| Reino Plantae | |||||||
| División | Clase | Orden o suborden | Familia | Nombre científico | Nombre común | Sinónimos | NOM-059- SEMARNAT- 2010 |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia alvarezii | Palmita | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia becerrae | Palmita | | A |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia decumbens | Palmita | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia euryphyllidia | | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia hildae | Pata de gallo | | A |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia huastecorum | | | A |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia kuesteriana | | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia latifolia | | Ceratozamia mexicana latifolia | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia matudae | | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia mexicana | Piña del monte, costilla de león | Ceratozamia mexicana mexicana, Ceratozamia mexicana fuscoviridis, Ceratozamia brevifolia, Ceratozamia brevifrons, Ceratozamia intermedia, Ceratozamia longifolia | A |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia microstrobila | Chamalillo | | A |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia miqueliana | Palmita | Ceratozamia ghiesbreghtii, Ceratozamia mexicana miqueliana | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia mirandae | Amendaui | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia mixeorum | Carrete | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia morettii | Tepetmaizte, tepemaizte (Náhuatl | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia norstogii | | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia robusta | Tushku, costilla de león | Ceratozamia mexicana robusta | A |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia vovidesii | Amenduai, palma | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia whitelockiana | | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia zaragozae | | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Ceratozamia zoquorum | | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Dioon angustifolium | Chamal | Dioon edule angustifolium, Dioon edule angustifolium, Dioon aculeatum | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Dioon califanoi | Palma | Dioon edule califanoi | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Dioon caputoi | Palma real | Dioon edule caputoi | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Dioon edule | Chamal, Palma de Teresita | Dioon strobilaceum, Platyzamia rigida, Dioon edule lanuginosum, Dioon imbricatum | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Dioon holmgrenii | Palma de sol, Marisol | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Dioon merolae | Espadaña, nimalari | Dioon edule merolae | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Dioon purpusii | Palma real | Dioon edule purpussi | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Dioon rzedowskii | Tush-kju | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Dioon sonorense | Palma de la Virgen | Dioon tomasellii sonorense, Dioon edule sonorense, Dioon edule gentry | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Dioon spinulosum | Palma de chicalite, palma de Dolores | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Dioon tomasellii | Palma de la Virgen | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Zamia cremnophila | | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Zamia fischeri | Chamalillo, amigo del maíz | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Zamia furfuracea | Palma bola, zamia | Zamia furfuracea trewii | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Zamia inermis | Palmita | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Zamia katzeriana | | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Zamia lacandona | | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Zamia purpurea | | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Zamia soconuscensis | | | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Zamia loddigesii | | Zamia spartea | P |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Zamia variegata | | Zamia picta | Pr |
| Cycadophyta | Cycadopsida | Cycadales | Zamiaceae | Zamia vazquezii | Amigo del maíz | | P |
| Coniferophyta | Pinopsida | Pinales | Pinaceae | Abies guatemalensis | Pinabete | Abies guatemalensis tacanensis, Abies tacanensis | P |
| Coniferophyta | Pinopsida | Pinales | Pinaceae | Abies guatemalensis jaliscana | Oyamel de Jalisco | Abies flinckii, Abies religiosa emarginata, | |
| Coniferophyta | Pinopsida | Pinales | Pinaceae | Abies hickelii | Oyamel de la Sierra de Juárez | | P |
| Coniferophyta | Pinopsida | Pinales | Pinaceae | Picea chihuahuana | Pinabete de Nuevo León | Picea martinezii | P |
| Coniferophyta | Pinopsida | Pinales | Pinaceae | Pinus culminicola | Pino del Potosí, piñón de octubre | | P |
| Coniferophyta | Pinopsida | Pinales | Pinaceae | Pinus maximartinezii | Pino azul | | P |
| Coniferophyta | Pinopsida | Pinales | Pinaceae | Pinus nelsonii | Piñón de Nelson | | P |
| Coniferophyta | Pinopsida | Pinales | Pinaceae | Pinus pinceana | Pino piñonero llorón | Pinus latisquama | P |
| Coniferophyta | Pinopsida | Pinales | Pinaceae | Pinus rzedowskii | Pino de Coalcomán | | P |
| Pteridophyta | Polypodiopsida | Cyatheales | Cyatheaceae | Alsophila firma | Helechos arborescentes | Cyathea firma, Cyathea mexicana, Nephelea mexicana, Cyathea articulata, Cyathea trejoi | Pr |
| Pteridophyta | Polypodiopsida | Cyatheales | Cyatheaceae | Cyathea salvinii | | Alsophila salvinii | |
| Pteridophyta | Polypodiopsida | Cyatheales | Dicksoniaceae | Cibotium regale | Helechos arborescentes | Cibotium guatemalense, Cibotium wendlandii, Dicksonia regalis | |
| Magnoliophyta | Liliopsida | Arecales | Arecaceae | Chamaedorea glaucifolia | Camedor despeinado | Discoma glaucifolia, Nunnezharia glaucifolia | P |
| Magnoliophyta | Liliopsida | Arecales | Arecaceae | Chamaedorea metallica | Camedor metálico | | P |
| Magnoliophyta | Liliopsida | Arecales | Arecaceae | Chamaedorea tenella | Camedor guayita | Nunnezharia tenella | P |
| Magnoliophyta | Liliopsida | Arecales | Arecaceae | Chamaedorea tuerckheimii | Camedor guonay | Malortiea tuerckheimii, Kinetostigma tuerckheimii | P |
| Magnoliophyta | Liliopsida | Arecales | Arecaceae | Synechanthus fibrosus | Falso camedor | Rathea fibrosa, Chamaedorea fibrosa, Synechanthus mexicanus, Collinia fibrosa, Talauma macrocarpa | P |
| Magnoliophyta | Liliopsida | Asparagales | Agavaceae | Agave angustifolia angustifolia | Maguey de la luna | Agave lurida | P |
| Magnoliophyta | Liliopsida | Asparagales | Agavaceae | Agave nizandensis | Maguey de Nizanda | | P |
| Magnoliophyta | Liliopsida | Asparagales | Agavaceae | Agave parviflora | Maguey sóbari | | A |
| Magnoliophyta | Liliopsida | Asparagales | Agavaceae | Agave victoriae- reginae | Noa | Agave nickelsii, Agave victoriae- reginae nickelsii, Agave consideranti | P |
| Magnoliophyta | Liliopsida | Asparagales | Agavaceae | Furcraea macdougallii | | | E |
| Magnoliophyta | Liliopsida | Asparagales | Agavaceae | Yucca queretaroensis | Izote estoquillo | | Pr |
| Magnoliophyta | Liliopsida | Asparagales | Nolinaceae | Beaucarnea gracilis | Pata de elefante, soyate barrigón | Dasylirion gracile, Beaucarnea oedipus, Nolina gracilis | A |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Barkeria scandens | Barkeria morada | Barkeria lindleyana cyclotella, Epidendrum lindleyanum cyclotellum, Epidendrum cyclotellum, Barkeria cyclotella, Pachyphyllum scandens | Pr |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Clowesia rosea | Clowesia rosada | Catasetum roseum | A |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Cuitlauzina pendula | Cuitlauzina perfumada, espíritu santo | Odontoglossum pendulum, Lichterveldia lindleyi rosella, Lichterveldia lindleyi, Odontoglossum citrosmum, Odontoglossum citrosmum rosellum, Oncidium citrosmum, Oncidium galeottianum | A |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Encyclia adenocaula | Encyclia conejo, angelitos | Epidendrum nemorale, Epidendrum adenocaulon, Encyclia nemoralis | A |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Encyclia kienastii | Encyclia de Kienast | Epidendrum kienastii | P |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Laelia anceps dawsonii | Laelia de Muertos, lirios | Laelia anceps hollydayana, Laelia anceps sanderiana, Laelia schroederiana, Laelia anceps schroederiana, Laelia sanderiana, Laelia anceps sanderiana, Laelia anceps sanderiana, Laelia anceps schroederiana, Laelia anceps sanderiana, Laelia dawsonii | |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Laelia gouldiana | Sanctorum, flor de muerto | | E |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Laelia speciosa | Laelia de mayo, lirios | Laelia majalis, Cattleya majalis, Cattleya grahamii, Bletia speciosa, Bletia grandiflora, Laelia grandiflora | Pr |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Lycaste lassioglossa | Lycaste pelosa | | P |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Lycaste skinneri | Lycaste monjita | Maxillaria skinneri, Lycaste virginalis, Lycaste skinneri virginalis, Lycaste alba, Maxillaria virginalis, Lycaste skinneri alba | P |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Mormodes sanguineoclaustra | Mormodes sanguíneo | | P |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Oncidium leucochilum | Oncidium de labio blanco | Oncidium polychromum, Oncidium leucochilum dawsonianum, Oncidium digitatum, Oncidium leucochilum speciosum, Cyrtochilum leucochilum | A |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Oncidium tigrinum | Oncidium atigrado | Oncidium ionosmum, Odontoglossum celsianum, Odontoglossum tigrinum, Oncidium tigrinum albens, Oncidium tigrinum giganteum, Oncidium barkeri, Oncidium tigrinum elatum | A |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Phragmipedium xerophyticum | | Paphiopedilum xerophyticum, Mexipedium xerophyticum | |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Prosthechea citrina | | | Pr |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Euchile mariae | | Prosthechea mariae | A |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Prosthechea vitellina | | Epidendrum vitellinum, Encyclia vitellina, Epidendrum vitellinum majus, Epidendrum vitellinum giganteum, Epidendrum vitellinum autumnale | Pr |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Rhynchostele ehrenbergii | Odontoglossum de Ehrenberg | Odontoglossum dawsonianum, Odontoglossum ehrenbergii, Lemboglossum ehrenbergii, Oncidium ehrenbergii, Cymbiglossum ehrenbergii, Odontoglossum rossii ehrenbergii | A |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Rhynchostele rossii | Odontoglossum de Ross | Odontoglossum rossii amesianum, Odontoglossum rossii warnerianum, Odontoglossum warnerianum, Odontoglossum rossii, Odontoglossum coerulescens, Odontoglossum rubescens, Cymbiglossum rossii, Lemboglossum rossii, Odontoglossum rossii acuminatum | A |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Rhynchostele uroskinneri | | Lemboglossum uroskinneri, Odontoglossum uroskinneri, Cymbiglossum uroskinneri | P |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Rossioglossum grande | Odontoglossum grande | Odontoglossum grande splendens, Odontoglossum grande | P |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Rossioglossum insleayi | Odontoglossum insleayi | Oncidium insleayi, Odontoglossum insleayi pantherinum, Odontoglossum insleayi, Odontoglossum insleayi leopardinum | A |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Rossioglossum williamsianum | Odontoglossum de Williams | Odontoglossum williamsianum, Odontoglossum grande williamsianum | P |
| Magnoliophyta | Liliopsida | Liliales | Orchidaceae | Vanilla planifolia | Vainilla | Vanilla fragrans, Myrobroma fragrans | Pr |
| Magnoliophyta | Liliopsida | Triuridales | Triuridaceae | Lacandonia schismatica | Lacandonia | | Pr |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Ariocarpus agavoides | Biznaga maguey pequeña | Neogomesia agavoides, Ariocarpus kotschoubeyanus agavoides | Pr |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Ariocarpus fissuratus bravoanus | Biznaga peyotillo | Ariocarpus kotschoubeyanus bravoanus | |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Ariocarpus scaphirostris | Cacto | Ariocarpus scaphirostris swobodae | P |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Astrophytum asterias | Biznaga algodoncillo de estrella, cacto estrella | Echinocactus asterias | P |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Carnegiea gigantea | Sahuaro | Carnegiea gigantea aberrans, Carnegiea gigantea cristata, Pilocereus giganteus, Pilocereus engelmannii, Cereus giganteus, | A |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Cephalocereus senilis | Órgano viejo real | Pilocereus senilis cristatus, Cereus senilis,Cephalocereus senilis fasciatus, Cephalocereus senilis cristatus, Cephalophorus senilis, Pilocereus senilis | A |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Cylindropuntia anteojoensis | Cholla del anteojo | Opuntia anteojoensis | Pr |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Echinocactus grusonii | Biznaga tonel dorada | | P |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Echinocactus platyacanthus | Biznaga tonel grande, Acitrón | Echinocactus ingens, Echinocactus grandis, Echinocactus platyacanthus visnaga, Echinocactus helophorus, Echinocactus karwinskii, Echinocactus palmeri, Echinocactus ingens palmeri, Echinocactus ingens saltillensis, Echinocactus visnaga, Echinocactus ingens | Pr |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Ferocactus histrix | Biznaga barril de acitrón | Echinocactus histrix, Echinocactus electracanthus, Echinocactus melocactiformis, Ferocactus melocactiformis, Bisnaga histrix, Bisnaga electracantha | Pr |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Ferocactus pilosus | Biznaga barril de lima | Echinocactus pilosus pringlei, stainesii pringlei, Ferocactus pringlei, Echinocactus piliferus, Ferocactus piliferus stainesii, Ferocactus stainesii, Ferocactus stainesii pilosus, Ferocactus piliferus, Ferocactus piliferus flavispinus, Echinocactus pilosu | Pr |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Ferocactus viridescens | Biznaga barril verdosa | Ferocactus viridescens littoralis, Ferocactus viridescens orcuttii, Echinocactus viridescens, Echinocactus orcuttii, Ferocactus orcuttii | A |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Lophophora diffusa diffusa | Peyote | Lophophora williamsii diffusa, Peyotl koehresii, Lophophora williamsii koehresii, Lophophora diffusa koehresii, Lophophora echinata diffusa, Peyotl diffusus | |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Lophophora diffusa viridescens | Peyote | Lophophora viridescens, Peyotl viridescens | |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Mammillaria gaumeri | Biznaga pol tsakam | Mammillaria heyderi gaumeri, Neomammillaria gaumeri | P |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Mammillaria hernandezii | Biznaga de Hernández | Bartschella hernandezii | Pr |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Mammillaria herrerae | Biznaga bola de hilo | Escobariopsis herrerae | P |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Mammillaria mathildae | Biznaga de La Cañada | Mammillaria fittkaui mathildae, Escobariopsis fittkaui mathildae | P |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Mammillaria sanchez- mejoradae | | Escobariopsis sanchez- mejoradae | P |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Turbinicarpus gielsdorfianus | Biznaga cono invertido de Gielsdorf | Pediocactus gielsdorfianus, Gymnocactus gielsdorfianus, Neolloydia gielsdorfiana, Thelocactus gielsdorfianus, Echinocactus gielsdorfianus | P |
| Magnoliophyta | Magnoliopsida | Caryophyllales | Cactaceae | Turbinicarpus pseudomacrochele | Turbinita de Querétaro | | P |
| Magnoliophyta | Magnoliopsida | Fabales | Fabaceae | Olneya tesota | Palo fierro | | Pr |
| Magnoliophyta | Magnoliopsida | Lamiales | Verbenaceae | Avicennia germinans | Mangle negro | | A |
| Magnoliophyta | Magnoliopsida | Magnoliales | Magnoliaceae | Talauma mexicana | | | |
| Magnoliophyta | Magnoliopsida | Malvales | Sterculiaceae | Chiranthodendron pentadactylon | Árbol de la manita, Macpalxochitl | | A |
| Magnoliophyta | Magnoliopsida | Myrtales | Combretaceae | Conocarpus erectus | Mangle botoncillo | | A |
| Magnoliophyta | Magnoliopsida | Myrtales | Combretaceae | Laguncularia racemosa | Mangle blanco | Conocarpus racemosa | A |
| Magnoliophyta | Magnoliopsida | Rhizophorales | Rhizophoraceae | Rhizophora mangle | Mangle rojo | Rhizophora samoensis, Rhizophora mangle samoensis, Rhizophora americana | A |
| Magnoliophyta | Magnoliopsida | Sapindales | Burseraceae | Bursera arborea | Copales y cuajiotes | Terebinthus arborea | A |
| Magnoliophyta | Magnoliopsida | Sapindales | Burseraceae | Bursera bonetii | Copales y cuajiotes | | Pr |
| Magnoliophyta | Magnoliopsida | Sapindales | Burseraceae | Bursera coyucensis | Copales y cuajiotes | | Pr |
| Reino Animalia | |||||||
| Phylum | Clase | Orden o suborden | Familia | Nombre científico | Nombre común | Sinónimos | NOM-059- SEMARNAT- 2010 |
| Cnidaria | Anthozoa | Scleractinia | Acroporidae | Acropora cervicornis | Coral asta de ciervo | | Pr |
| Cnidaria | Anthozoa | Scleractinia | Acroporidae | Acropora palmata | Coral asta de alce | | Pr |
| Arthropoda | Insecta | Lepidoptera | Danaidae | Danaus plexippus | Mariposa monarca | | Pr |
| Mollusca | Bivalvia | Pterioida | Pteriidae | Pinctada mazatlanica | Madreperla | | Pr |
| Mollusca | Gastropoda | Neogastropoda | Muricidae | Plicopurpura pansa | Caracol púrpura | | Pr |
| Craniata | Petromyzontida | Petromyzontiformes | Petromyzontidae | Tetrapleurodon spadiaceus | Lamprea de Chapala | Lampetra spadicea, Entosphenus spadiceus, Entosphenus spadicea | P |
| Craniata | Chondrichthyes | Lamniformes | Cetorhinidae | Cetorhinus maximus | Tiburón peregrino | Squalus maximus | A |
| Craniata | Chondrichthyes | Lamniformes | Lamnidae | Carcharodon carcharias | Tiburón blanco | Squalus carcharias | A |
| Craniata | Chondrichthyes | Orectolobiformes | Rhincodontidae | Rhincodon typus | Tiburón ballena | Micristodus punctatus | A |
| Craniata | Chondrichthyes | Pristiformes | Pristidae | Pristis pectinata | Pez sierra | | A |
| Craniata | Chondrichthyes | Pristiformes | Pristidae | Pristis pristis | Pez sierra | Pristis perotteti, Squalus pristis, Pristis zephyreus, Pristis microdon | A |
| Craniata | Actinopterygii | Atheriniformes | Atherinopsidae | Chirostoma riojai | Charal de Lerma, Charal de Toluca | Menidia riojai | P |
| Craniata | Actinopterygii | Atheriniformes | Atherinopsidae | Poblana alchichica | Charal de Alchichica | Menidia alchichica | A |
| Craniata | Actinopterygii | Cypriniformes | Cyprinidae | Cyprinella xanthicara | Sardinita o Carpa de Cuatrociénegas | Notropis xanthicara | P |
| Craniata | Actinopterygii | Cypriniformes | Cyprinidae | Hybognathus amarus | Carpa Chamizal | Algoma amara, Algoma fluviatilis | E |
| Craniata | Actinopterygii | Cyprinodontiformes | Cyprinodontidae | Cyprinodon bifasciatus | Cachorrito de Cuatrociénegas | | A |
| Craniata | Actinopterygii | Cyprinodontiformes | Cyprinodontidae | Cyprinodon maya | Cachorrito gigante | | P |
| Craniata | Actinopterygii | Cyprinodontiformes | Cyprinodontidae | Cyprinodon nazas | Cachorrito del Nazas | | A |
| Craniata | Actinopterygii | Cyprinodontiformes | Fundulidae | Fundulus lima | Sardinilla peninsular | | P |
| Craniata | Actinopterygii | Cyprinodontiformes | Goodeidae | Allodontichthys tamazulae | Mexcalpique de Tamazula | | P |
| Craniata | Actinopterygii | Cyprinodontiformes | Goodeidae | Allotoca goslinei | Tiro lineado | | P |
| Craniata | Actinopterygii | Cyprinodontiformes | Goodeidae | Allotoca regalis | Tiro rayado | Neoophorus regalis | P |
| Craniata | Actinopterygii | Cyprinodontiformes | Goodeidae | Ameca splendens | Mexcalpique mariposa | | P |
| Craniata | Actinopterygii | Cyprinodontiformes | Goodeidae | Girardinichthys viviparus | Mexcalpique | Cyprinus viviparus, Limnurgus variegatus, Characodon geddesi, Girardinichthys innominatus | P |
| Craniata | Actinopterygii | Cyprinodontiformes | Goodeidae | Hubbsina turneri | Mexcalpique michoacano, cherehuita | | P |
| Craniata | Actinopterygii | Cyprinodontiformes | Goodeidae | Ilyodon furcidens | Mexcalpique de Armería | Characodon furcidens | A |
| Craniata | Actinopterygii | Cyprinodontiformes | Goodeidae | Skiffia bilineata | Tiro rayado | Characodon bilineatus | P |
| Craniata | Actinopterygii | Cyprinodontiformes | Goodeidae | Skiffia lermae | Tiro olivo | Skiffia variegata | A |
| Craniata | Actinopterygii | Cyprinodontiformes | Poeciliidae | Gambusia longispinis | Guayacón de Cuatrociénegas | | A |
| Craniata | Actinopterygii | Cyprinodontiformes | Poeciliidae | Poecilia butleri | Topote del Pacífico | Platypoecilus nelsoni | Pr |
| Craniata | Actinopterygii | Cyprinodontiformes | Poeciliidae | Poecilia velifera | Topote de aleta grande | Mollienesia velifera | A |
| Craniata | Actinopterygii | Cyprinodontiformes | Poeciliidae | Xiphophorus gordoni | Espada de Cuatrociénegas | | P |
| Craniata | Actinopterygii | Cyprinodontiformes | Profundulidae | Profundulus hildebrandi | Escamudo de San Cristóbal | | P |
| Craniata | Actinopterygii | Gasterosteiformes | Syngnathidae | Hippocampus erectus | Caballito de mar rayado | Hippocampus punctulatus, Hippocampus hudsonius, Hippocampus marginalis, Hippocampus fascicularis | Pr |
| Craniata | Actinopterygii | Perciformes | Cichlidae | Cichlasoma grammodes | Mojarra de Chiapa de Corzo | | Pr |
| Craniata | Actinopterygii | Perciformes | Cichlidae | Herichthys bartoni | Mojarra caracolera | Acara bartoni, Cichlasoma bartoni | P |
| Craniata | Actinopterygii | Perciformes | Cichlidae | Herichthys minckleyi | Mojarra de Cuatrociénegas | Cichlasoma minckleyi | P |
| Craniata | Actinopterygii | Perciformes | Percidae | Etheostoma lugoi | Perca de Cuatrociénegas | | P |
| Craniata | Actinopterygii | Perciformes | Sciaenidae | Totoaba macdonaldi | Totoaba | Cynoscion macdonaldi | P |
| Craniata | Actinopterygii | Siluriformes | Ariidae | Potamarius nelsoni | Bagre lacandón | Conorhynchos nelsoni, Arius nelson | Pr |
| Craniata | Actinopterygii | Siluriformes | Ictaluridae | Ictalurus dugesii | Bagre del Lerma | Ameiurus dugesii | A |
| Craniata | Actinopterygii | Siluriformes | Ictaluridae | Ictalurus mexicanus | Bagre del Verde | Ameiurus mexicanus | A |
| Craniata | Actinopterygii | Siluriformes | Ictaluridae | Ictalurus pricei | Bagre del Yaqui | Ameiurus meeki, Villarius pricei | A |
| Craniata | Actinopterygii | Siluriformes | Lacantuniidae | Lacantunia enigmatica | Bagre de Chiapas | | P |
| Craniata | Amphibia | Anura | Craugastoridae | Craugastor yucatanensis | Rana ladrona yucateca | Eleutherodactylus yucatanensis | Pr |
| Craniata | Amphibia | Anura | Hylidae | Agalychnis callidryas | Rana arborícola de ojos rojos | Hyla callidryas | |
| Craniata | Amphibia | Anura | Hylidae | Agalychnis moreletii | Rana arborícola de ojos marrón | Hyla moreletii | |
| Craniata | Amphibia | Anura | Hylidae | Dendropsophus sartori | Rana arborícola de Taylor, rana arborícola del Pacífico | Hyla microcephala sartori | A |
| Craniata | Amphibia | Anura | Hylidae | Hyla euphorbiacea | Rana arborícola de las montañas del sur | | |
| Craniata | Amphibia | Anura | Ranidae | Lithobates johni | Rana de Moore | Rana johni | P |
| Craniata | Amphibia | Anura | Ranidae | Lithobates neovolcanicus | Rana neovolcánica | Rana neovolcanica | A |
| Craniata | Amphibia | Anura | Ranidae | Lithobates omiltemanus | Rana guerrerense | Rana omiltemana | P |
| Craniata | Amphibia | Anura | Ranidae | Lithobates pueblae | Rana poblana | Rana pueblae | P |
| Craniata | Amphibia | Anura | Ranidae | Lithobates tlaloci | Rana de Tláloc | Rana tlaloci | P |
| Craniata | Amphibia | Caudata | Ambystomatidae | Ambystoma altamirani | Siredón del Ajusco, ajolote, siredón de Zempoala | Ambystoma zempoalaensis, Rhyacosiredon zempoalaensis | A |
| Craniata | Amphibia | Caudata | Ambystomatidae | Ambystoma dumerilii | Achoque | Siredon dumerilii | Pr |
| Craniata | Amphibia | Caudata | Ambystomatidae | Ambystoma leorae | Siredón de Leora, ajolote | Rhyacosiredon leorae | A |
| Craniata | Amphibia | Caudata | Ambystomatidae | Ambystoma mexicanum | Salamandra o ajolote | Gyrinus mexicanus, Siredon pisciformis | P |
| Craniata | Amphibia | Caudata | Ambystomatidae | Ambystoma rivulare | Siredón de Toluca, ajolote | Rhyacosiredon rivularis | A |
| Craniata | Amphibia | Caudata | Plethodontidae | Batrachoseps major | Salamandra esbelta | | |
| Craniata | Amphibia | Caudata | Plethodontidae | Bolitoglossa alberchi | Salamandra lengua de hongo de Los Tuxtlas | | |
| Craniata | Amphibia | Caudata | Plethodontidae | Chiropterotriton chondrostega | Salamandra pie plano cartilaginosa | Bolitoglossa chondrostega | Pr |
| Craniata | Reptilia | Crocodylia | Alligatoridae | Caiman crocodilus | Caimán de anteojos | Caiman sclerops, Lacerta crocodilus | Pr |
| Craniata | Reptilia | Crocodylia | Crocodylidae | Crocodylus acutus | Cocodrilo de río | Crocodilus acutus | Pr |
| Craniata | Reptilia | Crocodylia | Crocodylidae | Crocodylus moreletii | Cocodrilo de pantano | | Pr |
| Craniata | Reptilia | Squamata | Anguidae | Abronia lythrochila | Lagarto alicante labios rojos | | A |
| Craniata | Reptilia | Squamata | Anguidae | Abronia ochoterenai | Lagarto alicante verde | Gerrhonotus vasconcelosii ochoterenai | P |
| Craniata | Reptilia | Squamata | Anguidae | Abronia ramirezi | Lagarto alicante de Jiquipilas | | |
| Craniata | Reptilia | Squamata | Colubridae | Cryophis hallbergi | Culebra de neblina de Hallberg | | A |
| Craniata | Reptilia | Squamata | Helodermatidae | Heloderma horridum | Lagarto enchaquirado mexicano, escorpión | Trachyderma horridum | A |
| Craniata | Reptilia | Squamata | Helodermatidae | Heloderma suspectum | Monstruo del Gila | | A |
| Craniata | Reptilia | Squamata | Iguanidae | Ctenosaura acanthura | Iguana espinosa del Golfo | Uromastyx acanthurus, Lacerta acanthura, Cyclura teres, Ctenosaura teres | Pr |
| Craniata | Reptilia | Squamata | Iguanidae | Ctenosaura defensor | Iguana yucateca | Ctenosaura erythromelas | P |
| Craniata | Reptilia | Squamata | Iguanidae | Ctenosaura hemilopha | Iguana espinosa de Sonora (complejo de especies) | Ctenosaura insulana, Cyclura hemilopha, Ctenosaura hemilopha hemilopha | Pr |
| Craniata | Reptilia | Squamata | Iguanidae | Ctenosaura oaxacana | Iguana de Oaxaca | | A |
| Craniata | Reptilia | Squamata | Iguanidae | Ctenosaura pectinata | Iguana espinosa mexicana | Cyclura pectinata, Ctenosaura brevirostris, Ctenosaura teres brachylopha | A |
| Craniata | Reptilia | Squamata | Iguanidae | Ctenosaura similis | Iguana espinosa rayada | Iguana similis, Ctenosaura completa | A |
| Craniata | Reptilia | Squamata | Iguanidae | Iguana iguana | Iguana verde | Lacerta iguana, Iguana viridis, Iguana squamosa, Iguana sapidissima, Iguana caerulea, Iguana tuberculata, Iguana lophyroides, Iguana emarginata, Iguana vulgaris, Iguana minima | Pr |
| Craniata | Reptilia | Squamata | Iguanidae | Sauromalus ater | Chuckwalla común | Sauromalus australis, Sauromalus obesus | Pr |
| Craniata | Reptilia | Squamata | Iguanidae | Sauromalus hispidus | Chuckwalla espinosa | | A |
| Craniata | Reptilia | Squamata | Iguanidae | Sauromalus klauberi | Chuckwalla de Isla Santa Catalina | Sauromalus ater klauberi | A |
| Craniata | Reptilia | Squamata | Iguanidae | Sauromalus slevini | Chuckwalla de Isla Monserrat | | A |
| Craniata | Reptilia | Squamata | Iguanidae | Sauromalus varius | Chuckwalla de Isla San Esteban | | A |
| Craniata | Reptilia | Squamata | Polychrotidae | Anolis parvicirculatus | Anolis de Berriozábal | Anolis parvicirculata, Norops parvicirculata | A |
| Craniata | Reptilia | Squamata | Viperidae | Cerrophidion tzotzilorum | Nauyaca de montaña tzotzil | Bothrops tzotzilorum | Pr |
| Craniata | Reptilia | Squamata | Viperidae | Crotalus catalinensis | Víbora de cascabel, cascabel de la Isla Santa Catalina | | A |
| Craniata | Reptilia | Squamata | Viperidae | Crotalus enyo | Víbora de cascabel | Caudisona enyo | A |
| Craniata | Reptilia | Squamata | Viperidae | Crotalus intermedius | Víbora de cascabel | | A |
| Craniata | Reptilia | Squamata | Viperidae | Crotalus lannomi | Cascabel de Autlán | | A |
| Craniata | Reptilia | Squamata | Viperidae | Crotalus pusillus | Víbora de cascabel | | A |
| Craniata | Reptilia | Squamata | Viperidae | Crotalus ravus | Víbora cascabel pigmea mexicana | Sistrurus ravus | A |
| Craniata | Reptilia | Squamata | Viperidae | Crotalus ruber | Víbora de cascabel | Crotalus exsul, Crotalus adamanteus ruber | Pr |
| Craniata | Reptilia | Squamata | Viperidae | Crotalus stejnegeri | Víbora de cascabel | | A |
| Craniata | Reptilia | Squamata | Viperidae | Crotalus transversus | Víbora de cascabel | | P |
| Craniata | Reptilia | Testudines | Cheloniidae | Caretta caretta | Tortuga marina caguama | Caretta atra, Caouana elongata, Testudo marina, Thalassochelys corticata, Testudo nasicornis, Testudo caretta, Testudo cephalo, Testudo caouana, Caretta nasuta, Caretta gigas, Chelonia pelasgorum | P |
| Craniata | Reptilia | Testudines | Cheloniidae | Chelonia mydas | Tortuga marina verde del Atlántico, tortuga blanca | Testudo macropus, Chelonia lachrymata, Chelonia virgata, Testudo cepediana, Testudo rugosa, Testudo chloronotos, Chelonia bicarinata, Chelonia marmorata, Chelonia formosa, Chelonia tenuis, Testudo viridis, Testudo marina vulgaris, Chelonia maculosa | P |
| Craniata | Reptilia | Testudines | Cheloniidae | Eretmochelys imbricata | Tortuga marina de carey | Caretta squamosa, Testudo imbricata, Onychochelys kraussi, Chelonia griseam, Chelonia pseudo-mydas, Chelonia pseudo-caretta, Chelonia radiata, Caretta rostrata, Eretmochelys squamata | P |
| Craniata | Reptilia | Testudines | Cheloniidae | Lepidochelys kempii | Tortuga lora | Thalassochelys kempii, Testudo mydas minor | P |
| Craniata | Reptilia | Testudines | Cheloniidae | Lepidochelys olivacea | Tortuga golfina | Cephalochelys oceanica, Chelonia dussumierii, Caretta remivaga, Thalassochelys controversa, Chelonia multiscutata, Chelonia olivacea, Thalassochelys tarapacana | P |
| Craniata | Reptilia | Testudines | Dermatemydidae | Dermatemys mawii | Tortuga blanca, tortuga de río centroamericana | Dermatemys salvinii, Limnochelone micrura, Emys berardii, Dermatemys abnormis | P |
| Craniata | Reptilia | Testudines | Dermochelyidae | Dermochelys coriacea | Tortuga marina laúd | Testudo coriacea, Testudo lutaria, Testudo arcuata, Testudo marina, Dermatochelys porcata, Sphargis angusta, Sphargis mercurialis, Testudo tuberculata, Testudo lyra, Dermochelys atlantica | P |
| Craniata | Reptilia | Testudines | Testudinidae | Gopherus berlandieri | Tortuga del desierto del noreste, galápago tamaulipeco | Xerobates berlandieri | A |
| Craniata | Reptilia | Testudines | Testudinidae | Gopherus flavomarginatus | Tortuga del desierto chihuahuense, galápago de Mapimí | Gopherus huecoensis | P |
| Craniata | Reptilia | Testudines | Testudinidae | Gopherus morafkai | Tortuga del desierto de Sonora, galápago de Sonora | | |
| Craniata | Aves | Accipitriformes | Accipitridae | Aquila chrysaetos | Águila real | | A |
| Craniata | Aves | Accipitriformes | Accipitridae | Harpia harpyja | Águila arpía | | P |
| Craniata | Aves | Accipitriformes | Accipitridae | Spizaetus melanoleucus | Águila blanquinegra | | P |
| Craniata | Aves | Accipitriformes | Accipitridae | Spizaetus ornatus | Águila elegante | | P |
| Craniata | Aves | Accipitriformes | Accipitridae | Spizaetus tyrannus | Águila tirana | | P |
| Craniata | Aves | Accipitriformes | Cathartidae | Gymnogyps californianus | Cóndor de California | | P |
| Craniata | Aves | Accipitriformes | Pandionidae | Pandion haliaetus | Gavilán pescador | | |
| Craniata | Aves | Anseriformes | Anatidae | Aix sponsa | Pato arcoíris | | |
| Craniata | Aves | Anseriformes | Anatidae | Anas acuta | Pato golondrino | | |
| Craniata | Aves | Anseriformes | Anatidae | Anas americana | Pato chalcuán | | |
| Craniata | Aves | Anseriformes | Anatidae | Anas clypeata | Pato cucharón norteño | | |
| Craniata | Aves | Anseriformes | Anatidae | Anas crecca | Cerceta ala verde | | |
| Craniata | Aves | Anseriformes | Anatidae | Anas cyanoptera | Cerceta canela | | |
| Craniata | Aves | Anseriformes | Anatidae | Anas discors | Cerceta ala azul | | |
| Craniata | Aves | Anseriformes | Anatidae | Anas fulvigula | Pato tejano | | A |
| Craniata | Aves | Anseriformes | Anatidae | Anas penelope | Pato silbador | | |
| Craniata | Aves | Anseriformes | Anatidae | Anas platyrhynchos diazi | Pato mexicano | | A |
| Craniata | Aves | Anseriformes | Anatidae | Anas querquedula | Cerceta ceja blanca | | |
| Craniata | Aves | Anseriformes | Anatidae | Anas strepera | Pato friso | | |
| Craniata | Aves | Anseriformes | Anatidae | Anser albifrons | Ganso careto mayor | | |
| Craniata | Aves | Anseriformes | Anatidae | Aythya affinis | Pato boludo menor | | |
| Craniata | Aves | Anseriformes | Anatidae | Aythya americana | Pato cabeza roja | | |
| Craniata | Aves | Anseriformes | Anatidae | Aythya collaris | Pato de pico anillado | | |
| Craniata | Aves | Anseriformes | Anatidae | Aythya marila | | | |
| Craniata | Aves | Anseriformes | Anatidae | Aythya valisineria | Pato coacoxtle | | |
| Craniata | Aves | Anseriformes | Anatidae | Branta bernicla nigricans | Ganso de collar | | A |
| Craniata | Aves | Anseriformes | Anatidae | Branta canadensis | Ganso canadiense | | |
| Craniata | Aves | Anseriformes | Anatidae | Bucephala albeola | Pato monja | | |
| Craniata | Aves | Anseriformes | Anatidae | Bucephala clangula | | | |
| Craniata | Aves | Anseriformes | Anatidae | Cairina moschata | Pato real | | P |
| Craniata | Aves | Anseriformes | Anatidae | Chen caerulescens | Ganso blanco | | |
| Craniata | Aves | Anseriformes | Anatidae | Chen rossii | Ganso de Ross | | |
| Craniata | Aves | Anseriformes | Anatidae | Cygnus columbianus | Cisne de tundra | | P |
| Craniata | Aves | Anseriformes | Anatidae | Dendrocygna autumnalis | Pijije ala blanca | | |
| Craniata | Aves | Anseriformes | Anatidae | Dendrocygna bicolor | Pijije canelo | | |
| Craniata | Aves | Anseriformes | Anatidae | Lophodytes cucullatus | Mergo de cresta blanca | | |
| Craniata | Aves | Anseriformes | Anatidae | Mergus merganser | Mergo mayor | | |
| Craniata | Aves | Anseriformes | Anatidae | Mergus serrator | Mergo copetón | | |
| Craniata | Aves | Anseriformes | Anatidae | Nomonyx dominicus | Pato colorado, pato enmascarado | | A |
| Craniata | Aves | Anseriformes | Anatidae | Oxyura jamaicensis | Pato tepalcate | | |
| Craniata | Aves | Charadriiformes | Charadriidae | Charadrius melodus | Chorlo chiflador | | P |
| Craniata | Aves | Charadriiformes | Charadriidae | Charadrius montanus | Chorlo llanero | | A |
| Craniata | Aves | Charadriiformes | Scolopacidae | Bartramia longicauda | Zarapito ganga | | |
| Craniata | Aves | Charadriiformes | Scolopacidae | Gallinago delicata | Agachona común | | |
| Craniata | Aves | Ciconiiformes | Ciconiidae | Jabiru mycteria | Cigüeña jabirú | | P |
| Craniata | Aves | Columbiformes | Columbidae | Patagioenas fasciata | Paloma de collar | Columba fasciata | |
| Craniata | Aves | Columbiformes | Columbidae | Patagioenas nigrirostris | Paloma triste, paloma piquinegra | | Pr |
| Craniata | Aves | Columbiformes | Columbidae | Patagioenas speciosa | Paloma escamosa, paloma morada, paloma del breñal, paloma real | | Pr |
| Craniata | Aves | Columbiformes | Columbidae | Zenaida asiatica | Paloma ala blanca | | |
| Craniata | Aves | Columbiformes | Columbidae | Zenaida macroura | Paloma huilota | | |
| Craniata | Aves | Galliformes | Cracidae | Oreophasis derbianus | Pavón, guan cornudo | | P |
| Craniata | Aves | Galliformes | Odontophoridae | Dendrortyx barbatus | Codorniz coluda veracruzana | | P |
| Craniata | Aves | Galliformes | Phasianidae | Meleagris gallopavo | Guajolote silvestre | | |
| Craniata | Aves | Galliformes | Phasianidae | Meleagris ocellata | Pavo ocelado | | A |
| Craniata | Aves | Gruiformes | Gruidae | Grus canadensis | Grulla gris | | Pr |
| Craniata | Aves | Passeriformes | Cardinalidae | Passerina rositae | Colorín azulrosa | | A |
| Craniata | Aves | Passeriformes | Corvidae | Cyanocorax beecheii | Chara Sinaloense | | P |
| Craniata | Aves | Passeriformes | Corvidae | Cyanocorax dickeyi | Chara Pinta Sinaloense | | P |
| Craniata | Aves | Passeriformes | Corvidae | Cyanolyca mirabilis | Chara de Omiltemi | | P |
| Craniata | Aves | Passeriformes | Emberizidae | Peucaea sumichrasti | Zacatonero istmeño | Aimophila sumichrasti | |
| Craniata | Aves | Passeriformes | Emberizidae | Spizella wortheni | Gorrión de Worthen | | P |
| Craniata | Aves | Passeriformes | Emberizidae | Xenospiza baileyi | Gorrión serrano | | P |
| Craniata | Aves | Passeriformes | Motacillidae | Anthus spragueii | Bisbita llanera | | |
| Craniata | Aves | Passeriformes | Parulidae | Geothlypis beldingi | Mascarita peninsular | | P |
| Craniata | Aves | Passeriformes | Parulidae | Geothlypis flavovelata | Mascarita de Altamira, tapaojitos, verdín de antifaz, verdín de Altamira | Geothlypis beldingi flavovelata | P |
| Craniata | Aves | Passeriformes | Parulidae | Geothlypis speciosa | Mascarita transvolcánica | | P |
| Craniata | Aves | Passeriformes | Polioptilidae | Polioptila californica atwoodi | Perlita californiana | | A |
| Craniata | Aves | Pelecaniformes | Threskiornithidae | Platalea ajaja | Espátula rosada | | |
| Craniata | Aves | Phoenicopteriformes | Phoenicopteridae | Phoenicopterus ruber | Flamenco americano | | A |
| Craniata | Aves | Procellariiformes | Diomedeidae | Phoebastria albatrus | Albatros rabón | | |
| Craniata | Aves | Procellariiformes | Diomedeidae | Phoebastria immutabilis | Albatros de Laysan | | A |
| Craniata | Aves | Procellariiformes | Diomedeidae | Phoebastria nigripes | Albatros pata negra | | A |
| Craniata | Aves | Procellariiformes | Hydrobatidae | Oceanodroma homochroa | Paíño cenizo | | P |
| Craniata | Aves | Procellariiformes | Hydrobatidae | Oceanodroma leucorhoa | Paíño de Leach | | |
| Craniata | Aves | Procellariiformes | Procellariidae | Procellaria parkinsoni | Petrel de Parkinson | | |
| Craniata | Aves | Procellariiformes | Procellariidae | Pterodroma cookii | Petrel de Cook | | P |
| Craniata | Aves | Procellariiformes | Procellariidae | Pterodroma externa | Petrel de Juan Fernández | | |
| Craniata | Aves | Procellariiformes | Procellariidae | Pterodroma phaeopygia | Petrel de Galápagos | | |
| Craniata | Aves | Procellariiformes | Procellariidae | Puffinus auricularis | Pardela de Revillagigedo | | P |
| Craniata | Aves | Procellariiformes | Procellariidae | Puffinus creatopus | Pardela pata rosada | | Pr |
| Craniata | Aves | Procellariiformes | Procellariidae | Puffinus opisthomelas | Pardela mexicana | | P |
| Craniata | Aves | Psittaciformes | Psittacidae | Amazona albifrons | Loro de frente blanca, cabeza de manta, catarino, cotorra guayabera, cotorra oaxaqueña, cotorra cucha, loro manglero, perico gordo, perico norteño, pericón X'Katzim | | Pr |
| Craniata | Aves | Psittaciformes | Psittacidae | Amazona auropalliata | Loro nuca amarilla | | P |
| Craniata | Aves | Psittaciformes | Psittacidae | Amazona autumnalis | Loro cachete amarillo | | |
| Craniata | Aves | Psittaciformes | Psittacidae | Amazona farinosa | Loro corona azul, loro chiapaneco, loro cabeza azul, loro real | | P |
| Craniata | Aves | Psittaciformes | Psittacidae | Amazona finschi | Loro corona lila, perico guayabero, cotorra frente roja | | P |
| Craniata | Aves | Psittaciformes | Psittacidae | Amazona oratrix | Loro cabeza amarilla | | P |
| Craniata | Aves | Psittaciformes | Psittacidae | Amazona viridigenalis | Loro tamaulipeco | | P |
| Craniata | Aves | Psittaciformes | Psittacidae | Amazona xantholora | Loro yucateco, loro maicero, E´xikin, T'uut | | A |
| Craniata | Aves | Psittaciformes | Psittacidae | Ara macao | Guacamaya roja | | P |
| Craniata | Aves | Psittaciformes | Psittacidae | Ara militaris | Guacamaya verde | | P |
| Craniata | Aves | Psittaciformes | Psittacidae | Aratinga canicularis | Perico frente naranja | | Pr |
| Craniata | Aves | Psittaciformes | Psittacidae | Aratinga holochlora | Perico mexicano (como especie) | | A |
| Craniata | Aves | Psittaciformes | Psittacidae | Aratinga nana | Perico pecho sucio, periquillo alcaparrero | | Pr |
| Craniata | Aves | Psittaciformes | Psittacidae | Aratinga strenua | Perico Centroamericano | Aratinga holochlora strenua | A |
| Craniata | Aves | Psittaciformes | Psittacidae | Bolborhynchus lineola | Perico barrado, periquito serrano, perico catarina | | A |
| Craniata | Aves | Psittaciformes | Psittacidae | Brotogeris jugularis | Perico ala amarilla | | A |
| Craniata | Aves | Psittaciformes | Psittacidae | Forpus cyanopygius | Perico catarina, catarina, catalina, cotorritas, perico enano, perico mexicano, periquito | | Pr |
| Craniata | Aves | Psittaciformes | Psittacidae | Pionus senilis | Loro corona blanca, loro viejito, X´culish | | A |
| Craniata | Aves | Psittaciformes | Psittacidae | Pyrilia haematotis | Loro cabeza oscura, perico cabeza negra | Pionopsitta haematotis | P |
| Craniata | Aves | Psittaciformes | Psittacidae | Rhynchopsitta pachyrhyncha | Cotorra serrana occidental | | P |
| Craniata | Aves | Psittaciformes | Psittacidae | Rhynchopsitta terrisi | Cotorra serrana oriental | | P |
| Craniata | Aves | Strigiformes | Strigidae | Glaucidium sanchezi | Tecolotito tamaulipeco | | P |
| Craniata | Aves | Trogoniformes | Trogonidae | Pharomachrus mocinno | Quetzal centroamericano | | P |
| Craniata | Mammalia | Artiodactyla | Antilocapridae | Antilocapra americana | Berrendo | Antilope americanus | P |
| Craniata | Mammalia | Artiodactyla | Cervidae | Mazama americana temama | Venado temazate rojo | Cervus temama, Mazama temama | |
| Craniata | Mammalia | Artiodactyla | Cervidae | Mazama pandora | Venado temazate café | | |
| Craniata | Mammalia | Artiodactyla | Cervidae | Odocoileus hemionus | Venado bura | Dorcelaphus hemionus, Dama hemionus, Cervus hemionus | |
| Craniata | Mammalia | Artiodactyla | Cervidae | Odocoileus virginianus | Venado cola blanca | Dama virginiana | |
| Craniata | Mammalia | Artiodactyla | Ovidae | Bison bison bison | Bisonte americano | | P |
| Craniata | Mammalia | Artiodactyla | Ovidae | Ovis canadensis | Borrego cimarrón | | Pr |
| Craniata | Mammalia | Artiodactyla | Tayassuidae | Tayassu pecari ringens | Pecarí de labios blancos | Dicotyles labiatus, Tayassu albirostris ringens | P |
| Craniata | Mammalia | Carnivora | Canidae | Canis lupus baileyi | Lobo mexicano, lobo gris | Canis nubilus baileyi | E |
| Craniata | Mammalia | Carnivora | Felidae | Panthera onca | Jaguar | Felis onca | P |
| Craniata | Mammalia | Carnivora | Mustelidae | Enhydra lutris | Nutria marina | Latax lutris, Mustela lutris | |
| Craniata | Mammalia | Carnivora | Mustelidae | Lontra longicaudis | Nutria de río | | |
| Craniata | Mammalia | Carnivora | Otariidae | Arctocephalus townsendi | Lobo fino de Guadalupe | | P |
| Craniata | Mammalia | Carnivora | Otariidae | Zalophus californianus | Lobo marino de California | | Pr |
| Craniata | Mammalia | Carnivora | Phocidae | Mirounga angustirostris | Elefante marino | | A |
| Craniata | Mammalia | Carnivora | Phocidae | Phoca vitulina richardii | Foca común, lobo marino pinto | | Pr |
| Craniata | Mammalia | Carnivora | Ursidae | Ursus americanus eremicus | Oso negro (incluye también la población de Sierra del Burro, Coahuila) | Euarctos americanus amblyceps, Ursus amblyceps | P |
| Craniata | Mammalia | Cetacea | Balaenopteridae | Balaenoptera musculus | Ballena azul | | Pr |
| Craniata | Mammalia | Cetacea | Balaenopteridae | Balaenoptera physalus | Rorcual común, ballena de aleta | | Pr |
| Craniata | Mammalia | Cetacea | Balaenopteridae | Megaptera novaeangliae | Ballena jorobada | | Pr |
| Craniata | Mammalia | Cetacea | Delphinidae | Tursiops truncatus | Tonina, bufeo, delfín nariz de botella, tursión | | Pr |
| Craniata | Mammalia | Cetacea | Eschrichtiidae | Eschrichtius robustus | Ballena gris | | Pr |
| Craniata | Mammalia | Cetacea | Phocoenidae | Phocoena sinus | Vaquita marina | | P |
| Craniata | Mammalia | Chiroptera | Phyllostomidae | Leptonycteris yerbabuenae | Murciélago magueyero menor | Leptonycteris curasoae yerbabuenae | |
| Craniata | Mammalia | Chiroptera | Phyllostomidae | Leptonycteris nivalis | Murciélago magueyero mayor, murciélago hocicudo mayor | | A |
| Craniata | Mammalia | Lagomorpha | Leporidae | Lepus callotis | Liebre torda | | |
| Craniata | Mammalia | Lagomorpha | Leporidae | Lepus flavigularis | Liebre de Tehuantepec | Lepus callotis flavigularis | P |
| Craniata | Mammalia | Lagomorpha | Leporidae | Lepus insularis | Liebre negra | Lepus edwardsi, Lepus californicus insularis | Pr |
| Craniata | Mammalia | Lagomorpha | Leporidae | Romerolagus diazi | Zacatuche, Teporingo, conejo de los volcanes | Lepus diazi, Romerolagus nelsoni | P |
| Craniata | Mammalia | Lagomorpha | Leporidae | Sylvilagus graysoni | Conejo de Tres Marías | | P |
| Craniata | Mammalia | Lagomorpha | Leporidae | Sylvilagus insonus | Conejo de Omiltemi | Lepus insonus | P |
| Craniata | Mammalia | Lagomorpha | Leporidae | Sylvilagus mansuetus | Conejo de San José | | P |
| Craniata | Mammalia | Perissodactyla | Tapiridae | Tapirus bairdii | Tapir centroamericano | Elasmognathus bairdii, Elasmognathus dowii, Tapirella bairdii | P |
| Craniata | Mammalia | Primates | Atelidae | Alouatta palliata | Mono aullador, saraguato de manto | Mycetes palliatus, Alouatta villosa mexicana, Alouatta palliata mexicana | P |
| Craniata | Mammalia | Primates | Atelidae | Alouatta pigra | Mono aullador, saraguato yucateco | Alouatta villosa, Alouatta palliata pigra | P |
| Craniata | Mammalia | Primates | Atelidae | Ateles geoffroyi | Mono araña | | P |
| Craniata | Mammalia | Rodentia | Castoridae | Castor canadensis | Castor | | P |
| Craniata | Mammalia | Rodentia | Sciuridae | Cynomys ludovicianus | Perrito de las praderas, perro llanero cola negra | Arctomys ludoviciana | A |
| Craniata | Mammalia | Rodentia | Sciuridae | Cynomys mexicanus | Perrito de las praderas, perro llanero mexicano | | P |
| Craniata | Mammalia | Rodentia | Sciuridae | Glaucomys volans | Ardilla voladora, ardilla planeadora | Mus volans | A |
| Craniata | Mammalia | Sirenia | Trichechidae | Trichechus manatus | Manatí del Caribe | | P |